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Crystal structure of P450 BM3 5F5 heme domain variant complexed with styrene (dataset II)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J4S PDB ENTRY 2J4S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 100-160 mM magnesium chloride, 100 mM 2-(N-morpholino)ethanesulfonic acid (pH 6.5), 10-20% PEG 3350/PEG 2000 MME, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.7 54.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.99 α = 90 b = 148.89 β = 98.37 c = 64.82 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm mirrors 2010-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.81 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 19.99 88.5 22.73 3.2 175984 155738 1.6 -3 23.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.573 83.3 19343
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2J4S 1.5 19.99 175984 155738 839 88.46 0.17794 0.17782 0.1761 0.19927 0.197 RANDOM 20.331
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.01 -0.01 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.385 r_dihedral_angle_4_deg 17.443 r_dihedral_angle_3_deg 14.566 r_rigid_bond_restr 14.053 r_dihedral_angle_1_deg 6.536 r_angle_refined_deg 2.635 r_chiral_restr 0.165 r_bond_refined_d 0.026 r_gen_planes_refined 0.013 r_sphericity_free
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.385 r_dihedral_angle_4_deg 17.443 r_dihedral_angle_3_deg 14.566 r_rigid_bond_restr 14.053 r_dihedral_angle_1_deg 6.536 r_angle_refined_deg 2.635 r_chiral_restr 0.165 r_bond_refined_d 0.026 r_gen_planes_refined 0.013 r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7311 Nucleic Acid Atoms Solvent Atoms 916 Heterogen Atoms 151
Software Software Software Name Purpose DNA data collection Auto-Rickshaw phasing REFMAC refinement XDS data reduction XSCALE data scaling