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Mutant M58C of Nostoc sp Cytochrome c6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4GYD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 293 0.1M Citrate, 2.5M Ammonium sulphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.31 46.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.823 α = 90 b = 80.157 β = 90 c = 80.147 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 IMAGE PLATE MAR scanner 345 mm plate 2005-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 26.72 98.5 32713 32713
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 98.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4GYD 2 26.72 32713 32713 1773 98.53 0.20863 0.20863 0.20661 0.2106 0.24586 0.2484 RANDOM 32.934
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 0.11 0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.232 r_dihedral_angle_4_deg 20.695 r_dihedral_angle_3_deg 13.5 r_dihedral_angle_1_deg 5.93 r_angle_other_deg 2.431 r_angle_refined_deg 1.719 r_chiral_restr 0.134 r_gen_planes_other 0.028 r_bond_refined_d 0.017 r_gen_planes_refined 0.014
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.232 r_dihedral_angle_4_deg 20.695 r_dihedral_angle_3_deg 13.5 r_dihedral_angle_1_deg 5.93 r_angle_other_deg 2.431 r_angle_refined_deg 1.719 r_chiral_restr 0.134 r_gen_planes_other 0.028 r_bond_refined_d 0.017 r_gen_planes_refined 0.014 r_bond_other_d 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3828 Nucleic Acid Atoms Solvent Atoms 467 Heterogen Atoms 258
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling