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Complex of G65T Myoglobin with DMSO in its Distal Cavity
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 2.6M AS, 50mM Tris 8.5, 1mM EDTA, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.08 60.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.499 α = 90 b = 90.499 β = 90 c = 45.319 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2009-06-13 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.26 50 99.9 0.069 16.2 5.6 57188
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.26 1.31 99.9 0.164 4.9 5668
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.26 32.02 57185 2902 99.88 0.1284 0.1271 0.126 0.1534 0.1518 RANDOM 12.7219
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.02 0.04 -0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.642 r_dihedral_angle_4_deg 14.488 r_dihedral_angle_3_deg 11.184 r_scangle_it 6.49 r_dihedral_angle_1_deg 5.11 r_scbond_it 5.108 r_mcangle_it 3.159 r_rigid_bond_restr 3.13 r_angle_refined_deg 2.349 r_mcbond_it 2.224
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.642 r_dihedral_angle_4_deg 14.488 r_dihedral_angle_3_deg 11.184 r_scangle_it 6.49 r_dihedral_angle_1_deg 5.11 r_scbond_it 5.108 r_mcangle_it 3.159 r_rigid_bond_restr 3.13 r_angle_refined_deg 2.349 r_mcbond_it 2.224 r_chiral_restr 0.123 r_bond_refined_d 0.028 r_gen_planes_refined 0.015
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1212 Nucleic Acid Atoms Solvent Atoms 266 Heterogen Atoms 73
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SERGUI data collection