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Complex of G65T Myoglobin with Phenol in its Proximal Cavity
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 2.6M AS, 50mM Tris 8.5, 1mM EDTA, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.06 59.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.531 α = 90 b = 90.531 β = 90 c = 45.158 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2009-06-13 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.14 50 99.9 0.052 13.4 7.5 76906 4.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.14 1.16 98.1 0.366 3.7 3777
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.14 39.13 76880 3859 99.87 0.1339 0.1329 0.1311 0.1526 0.1514 RANDOM 12.9702
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.01 0.02 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.65 r_dihedral_angle_4_deg 15.777 r_dihedral_angle_3_deg 11.422 r_scangle_it 7.167 r_scbond_it 5.345 r_dihedral_angle_1_deg 5.155 r_rigid_bond_restr 3.052 r_mcangle_it 3.045 r_angle_refined_deg 2.343 r_mcbond_it 2.021
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.65 r_dihedral_angle_4_deg 15.777 r_dihedral_angle_3_deg 11.422 r_scangle_it 7.167 r_scbond_it 5.345 r_dihedral_angle_1_deg 5.155 r_rigid_bond_restr 3.052 r_mcangle_it 3.045 r_angle_refined_deg 2.343 r_mcbond_it 2.021 r_chiral_restr 0.118 r_bond_refined_d 0.027 r_gen_planes_refined 0.015
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1219 Nucleic Acid Atoms Solvent Atoms 233 Heterogen Atoms 78
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction SERGUI data collection