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Product Complexes of Porcine Liver Fructose-1,6-bisphosphatase with mutation R22M Reveal a T-state Conformation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EYJ PDB ENTRY 1EYJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 HANGING DROP 7.5 298 PEG3350, t-butyl alcohol, glycerol, pH 7.5, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.64 53.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.249 α = 90 b = 165.012 β = 90 c = 79.135 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS 2012-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 35.92 85.2 0.073 12.2 3.45 37724 32141 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.33 69.2 0.299 2.6 1.94
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1EYJ 2.25 35.92 37711 30510 1603 85.16 0.21453 0.21168 0.2103 0.26953 0.2625 RANDOM 24.373
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.653 r_dihedral_angle_3_deg 18.112 r_dihedral_angle_4_deg 17.962 r_dihedral_angle_1_deg 6.618 r_scangle_it 4.302 r_mcangle_it 3.224 r_scbond_it 2.913 r_mcbond_it 2.065 r_angle_refined_deg 1.923 r_chiral_restr 0.136
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.653 r_dihedral_angle_3_deg 18.112 r_dihedral_angle_4_deg 17.962 r_dihedral_angle_1_deg 6.618 r_scangle_it 4.302 r_mcangle_it 3.224 r_scbond_it 2.913 r_mcbond_it 2.065 r_angle_refined_deg 1.923 r_chiral_restr 0.136 r_bond_refined_d 0.024 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4986 Nucleic Acid Atoms Solvent Atoms 318 Heterogen Atoms 56
Software Software Software Name Purpose d*TREK data scaling d*TREK data reduction MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection