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Crystal Structure of product complexes of Porcine Liver Fructose-1,6-bisphosphatase with blocked subunit pair rotation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CNQ PDB ENTRY 1CNQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 HANGING DROP 7.5 298 PEG3350, t-butyl alcohol, glycerol, pH 7.5, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.49 50.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.444 α = 90 b = 82.629 β = 90 c = 165.405 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS 2011-10-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 50.855 93.1 0.169 4.5 3.02 7674 7145 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 96.6 0.488 1.6 2.94
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CNQ 3.2 50.855 7674 5607 274 92.56 0.24482 0.24215 0.2374 0.30014 0.297 RANDOM 58.372
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 -0.03 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.19 r_dihedral_angle_3_deg 22.943 r_dihedral_angle_4_deg 22.55 r_mcangle_it 6.467 r_dihedral_angle_1_deg 4.649 r_mcbond_it 4.177 r_scangle_it 2.201 r_angle_refined_deg 1.738 r_scbond_it 1.401 r_chiral_restr 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.19 r_dihedral_angle_3_deg 22.943 r_dihedral_angle_4_deg 22.55 r_mcangle_it 6.467 r_dihedral_angle_1_deg 4.649 r_mcbond_it 4.177 r_scangle_it 2.201 r_angle_refined_deg 1.738 r_scbond_it 1.401 r_chiral_restr 0.11 r_bond_refined_d 0.018 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2401 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 39
Software Software Software Name Purpose d*TREK data scaling d*TREK data reduction MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection