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TetX derivatized with Xenon
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XDO PDB entry 2XDO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.51 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.71 α = 111.04 b = 80.14 β = 90.06 c = 87.5 γ = 93.29
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 1.5 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.73 50 0.14 11.79 3.43 41035 54.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.73 2.8 0.89 1.74 1.83
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2XDO 2.73 47.27 41035 2183 93.61 0.18332 0.18131 0.1835 0.22105 0.223 RANDOM 67.876
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.36 -1.32 -1.15 0.97 -0.3 -3.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.466 r_dihedral_angle_3_deg 19.808 r_dihedral_angle_4_deg 18.624 r_dihedral_angle_1_deg 6.782 r_angle_refined_deg 1.683 r_chiral_restr 0.104 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11476 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 275
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling