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FTase in complex with BMS analogue 13
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EU5 PDB ENTRY 3EU5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 292 20% (w/v) PEG 4000, 0.2M MgCl2, 0.1M Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.25 62.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 172.275 α = 90 b = 172.275 β = 90 c = 69.607 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-05-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9786 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 29.91 99.9 0.061 18.8 5.6 60055 60023 40.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.3 99.9 0.387 4.5 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3EU5 2.2 29.91 60055 57015 2988 99.96 0.18039 0.17871 0.191 0.21229 0.2236 RANDOM 42.553
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.23 0.62 1.23 -1.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.171 r_dihedral_angle_4_deg 18.288 r_dihedral_angle_3_deg 17.061 r_dihedral_angle_1_deg 6.895 r_angle_other_deg 4.126 r_scangle_it 3.087 r_scbond_it 1.996 r_angle_refined_deg 1.439 r_mcangle_it 1.352 r_mcbond_it 0.729
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.171 r_dihedral_angle_4_deg 18.288 r_dihedral_angle_3_deg 17.061 r_dihedral_angle_1_deg 6.895 r_angle_other_deg 4.126 r_scangle_it 3.087 r_scbond_it 1.996 r_angle_refined_deg 1.439 r_mcangle_it 1.352 r_mcbond_it 0.729 r_symmetry_hbond_refined 0.317 r_symmetry_vdw_other 0.278 r_symmetry_vdw_refined 0.269 r_nbd_other 0.242 r_nbd_refined 0.239 r_xyhbond_nbd_refined 0.219 r_nbtor_refined 0.186 r_nbtor_other 0.11 r_chiral_restr 0.085 r_bond_refined_d 0.014 r_gen_planes_other 0.008 r_gen_planes_refined 0.006 r_bond_other_d r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5834 Nucleic Acid Atoms Solvent Atoms 405 Heterogen Atoms 83
Software Software Software Name Purpose MOSFLM data reduction PHASES phasing REFMAC refinement XDS data reduction XSCALE data scaling