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FTase in complex with BMS analogue 12
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EU5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 292 20% (w/v) PEG 4000, 0.2M MgCl2, 0.1M Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.26 62.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 172.397 α = 90 b = 172.397 β = 90 c = 69.781 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 29.91 99.9 0.082 16.3 5.6 36661 36611 43.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.7 99.9 0.381 5.3 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3EU5 2.6 29.91 36661 34781 1809 99.89 0.17383 0.17123 0.189 0.22269 0.2263 RANDOM 37.122
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.29 0.64 1.29 -1.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.505 r_dihedral_angle_4_deg 20.283 r_dihedral_angle_3_deg 17.653 r_dihedral_angle_1_deg 5.99 r_scangle_it 4.728 r_angle_other_deg 4.093 r_scbond_it 3.095 r_mcangle_it 2.157 r_mcbond_other 1.622 r_angle_refined_deg 1.603
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.505 r_dihedral_angle_4_deg 20.283 r_dihedral_angle_3_deg 17.653 r_dihedral_angle_1_deg 5.99 r_scangle_it 4.728 r_angle_other_deg 4.093 r_scbond_it 3.095 r_mcangle_it 2.157 r_mcbond_other 1.622 r_angle_refined_deg 1.603 r_mcbond_it 1.263 r_symmetry_vdw_other 0.379 r_symmetry_vdw_refined 0.359 r_nbd_refined 0.306 r_nbd_other 0.273 r_symmetry_hbond_refined 0.23 r_xyhbond_nbd_refined 0.206 r_nbtor_refined 0.196 r_nbtor_other 0.109 r_chiral_restr 0.09 r_bond_refined_d 0.017 r_gen_planes_other 0.007 r_gen_planes_refined 0.006 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5824 Nucleic Acid Atoms Solvent Atoms 244 Heterogen Atoms 74
Software Software Software Name Purpose MOSFLM data reduction PHASES phasing REFMAC refinement XDS data reduction XSCALE data scaling