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FTase in complex with BMS analogue 14
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EU5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 292 20% (w/v) PEG 4000, 0.2M MgCl2, 0.1M Tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.26 62.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 172.704 α = 90 b = 172.704 β = 90 c = 69.586 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 29.91 99 0.054 15.9 4 64604 63953 41
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.25 99.8 0.365 4.2 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3EU5 2.15 29.91 64604 60748 3190 99.02 0.18955 0.18763 0.2047 0.22518 0.2378 RANDOM 37.95
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.48 0.74 1.48 -2.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.474 r_dihedral_angle_4_deg 18.877 r_dihedral_angle_3_deg 16.026 r_dihedral_angle_1_deg 5.722 r_scangle_it 4.35 r_angle_other_deg 4.146 r_mcbond_other 3.186 r_mcangle_it 2.806 r_scbond_it 2.712 r_mcbond_it 1.689
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.474 r_dihedral_angle_4_deg 18.877 r_dihedral_angle_3_deg 16.026 r_dihedral_angle_1_deg 5.722 r_scangle_it 4.35 r_angle_other_deg 4.146 r_mcbond_other 3.186 r_mcangle_it 2.806 r_scbond_it 2.712 r_mcbond_it 1.689 r_angle_refined_deg 1.238 r_symmetry_vdw_refined 0.303 r_symmetry_vdw_other 0.288 r_nbd_refined 0.287 r_nbd_other 0.273 r_xyhbond_nbd_refined 0.249 r_symmetry_hbond_refined 0.196 r_nbtor_refined 0.183 r_metal_ion_refined 0.157 r_nbtor_other 0.108 r_chiral_restr 0.074 r_bond_refined_d 0.01 r_gen_planes_other 0.006 r_gen_planes_refined 0.004 r_bond_other_d r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5848 Nucleic Acid Atoms Solvent Atoms 562 Heterogen Atoms 65
Software Software Software Name Purpose MOSFLM data reduction PHASES phasing REFMAC refinement XDS data reduction XSCALE data scaling