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FTase in complex with BMS analogue 11
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EU5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 292 20% (w/v) PEG 4000, 0.2M MgCl2, 0.1M Tris , pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 3.31 62.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 173.171 α = 90 b = 173.171 β = 90 c = 70.289 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9789 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 19.94 99.9 0.06 20.9 6.2 61233 61202 39.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 100 0.38 4.6 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3EU5 2.2 19.94 61233 58071 3045 99.97 0.17552 0.1733 0.185 0.21782 0.2256 RANDOM 31.53
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.85 0.42 0.85 -1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.729 r_dihedral_angle_4_deg 19.168 r_dihedral_angle_3_deg 15.825 r_dihedral_angle_1_deg 5.667 r_angle_other_deg 4.145 r_mcbond_other 3.843 r_scangle_it 3.676 r_scbond_it 2.245 r_mcangle_it 1.999 r_angle_refined_deg 1.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.729 r_dihedral_angle_4_deg 19.168 r_dihedral_angle_3_deg 15.825 r_dihedral_angle_1_deg 5.667 r_angle_other_deg 4.145 r_mcbond_other 3.843 r_scangle_it 3.676 r_scbond_it 2.245 r_mcangle_it 1.999 r_angle_refined_deg 1.41 r_mcbond_it 1.103 r_symmetry_vdw_refined 0.347 r_xyhbond_nbd_refined 0.266 r_nbd_refined 0.251 r_nbd_other 0.247 r_symmetry_vdw_other 0.245 r_symmetry_hbond_refined 0.21 r_nbtor_refined 0.181 r_nbtor_other 0.107 r_chiral_restr 0.086 r_bond_refined_d 0.014 r_gen_planes_other 0.008 r_gen_planes_refined 0.006 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5882 Nucleic Acid Atoms Solvent Atoms 601 Heterogen Atoms 81
Software Software Software Name Purpose MOSFLM data reduction PHASES phasing REFMAC refinement XDS data reduction XSCALE data scaling