☰ Navigation Tabs
Human menin with bound inhibitor MI-2-2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 0.2 M ammonium acetate, 0.1 M HEPES pH 7.5 and 25% w/v PEG
3,350. This solution was mixed 1:1 with 2.5mg/mL protein in 50mM
Tris-HCl (pH 8.0), NBm1 peptide, 50mM NaCl, and 1mM TCEP. Prior to data collection,
crystals were transferred into a cryo-solution containing 20% PEG550
MME and flash-frozen in liquid nitrogen, 200 mM 0RT, VAPOR DIFFUSION, SITTING DROP
Crystal Properties Matthews coefficient Solvent content 2.25 45.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.044 α = 90 b = 80.16 β = 90 c = 124.812 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 300 mm CCD M SINGLE WAVELENGTH 2 1 CCD MARMOSAIC 225 mm CCD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D APS 21-ID-D 2 SYNCHROTRON APS BEAMLINE 21-ID-F APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.27 40.08 99.9 0.108 30.6 6.2 129732
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.27 1.29 99.9 0.646 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.27 40.08 119332 6276 96.44 0.15071 0.14911 0.1502 0.18158 0.1791 RANDOM 19.565
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.77 0.23 -2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.381 r_dihedral_angle_4_deg 18.37 r_sphericity_bonded 13.817 r_dihedral_angle_3_deg 11.652 r_rigid_bond_restr 7.488 r_dihedral_angle_1_deg 5.617 r_angle_other_deg 4.238 r_angle_refined_deg 1.983 r_chiral_restr 0.136 r_bond_refined_d 0.022
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.381 r_dihedral_angle_4_deg 18.37 r_sphericity_bonded 13.817 r_dihedral_angle_3_deg 11.652 r_rigid_bond_restr 7.488 r_dihedral_angle_1_deg 5.617 r_angle_other_deg 4.238 r_angle_refined_deg 1.983 r_chiral_restr 0.136 r_bond_refined_d 0.022 r_gen_planes_other 0.018 r_gen_planes_refined 0.012 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3690 Nucleic Acid Atoms Solvent Atoms 594 Heterogen Atoms 94
Software Software Software Name Purpose REFMAC refinement