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Crystal structure of human B7-H4 IgV-like domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 291 200 mM tri-Potassium citrate, 2.2 M ammonium sulfate, pH 7.0, VAPOR DIFFUSION, temperature 291K 2 VAPOR DIFFUSION 7 291 200 mM tri-Potassium citrate, 2.2 M ammonium sulfate, I3C (magic triangle) soak, pH 7.0, VAPOR DIFFUSION, temperature 291K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.5 α = 90 b = 46.5 β = 90 c = 115.77 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2012-06-08 M SINGLE WAVELENGTH 2 2
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.0750, 1.5402 NSLS X29A 2 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.59 43.149 90.1 0.088 17.7 13.3 17917 16143 13.046
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.59 1.68 100 0.489 1.6 13.5 2548
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.59 19.91 16916 15194 837 89.82 0.175 0.1741 0.1846 0.1916 0.1957 RANDOM 15.8718
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.02 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.737 r_dihedral_angle_4_deg 27.761 r_dihedral_angle_3_deg 11.609 r_dihedral_angle_1_deg 6.174 r_angle_refined_deg 1.474 r_angle_other_deg 0.725 r_chiral_restr 0.085 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.737 r_dihedral_angle_4_deg 27.761 r_dihedral_angle_3_deg 11.609 r_dihedral_angle_1_deg 6.174 r_angle_refined_deg 1.474 r_angle_other_deg 0.725 r_chiral_restr 0.085 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 871 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms 61
Software Software Software Name Purpose SCALA data scaling SHELX phasing REFMAC refinement PDB_EXTRACT data extraction CBASS data collection MOSFLM data reduction SHELXD phasing