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The Crystal structure of Arl2GppNHp in complex with UNC119a
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1KSH 1KSH, 3GQQ experimental model PDB 3GQQ 1KSH, 3GQQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 2% PEG400 and 2M Ammonium Sulfate, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.37 48.05
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.45 α = 90 b = 61.08 β = 101.33 c = 143.62 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2008-11-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 29.85 99.2 0.219 9.39 3.98 26616 26616
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.65 99.3 0.66 3 3.8 1462
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1KSH, 3GQQ 2.6 29.85 25284 25284 1331 99.25 0.24772 0.24525 0.2454 0.29697 0.2935 RANDOM 26.741
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.64 0.09 -0.4 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.857 r_dihedral_angle_4_deg 21.909 r_dihedral_angle_3_deg 18.458 r_dihedral_angle_1_deg 7.04 r_angle_refined_deg 1.714 r_chiral_restr 0.109 r_bond_refined_d 0.016 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5154 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 66
Software Software Software Name Purpose XDS data scaling MOLREP phasing REFMAC refinement XDS data reduction