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DNA ligase A in complex with inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 291.15 0.1 M sodium citrate, 25 mM sodium acetate, 24 % (w/v) PEG 4000, 0.2 M ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 291.15K
Crystal Properties Matthews coefficient Solvent content 2.87 57.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.99 α = 90 b = 100.14 β = 105.5 c = 86.57 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 CCD Mar225 2009-05-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 19.73 96.1 0.159 8.22 3 -3 24.81
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2.1 97.4 0.649 2.04
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 19.73 69085 45003 2251 62.69 0.2032 0.2032 0.2007 0.2 0.2497 0.2481 RANDOM 17.2358
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 0.42 0.53 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.812 r_dihedral_angle_4_deg 18.914 r_dihedral_angle_3_deg 17.583 r_dihedral_angle_1_deg 6.542 r_angle_refined_deg 2.09 r_chiral_restr 0.13 r_bond_refined_d 0.017 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4308 Nucleic Acid Atoms 1061 Solvent Atoms 204 Heterogen Atoms 25
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction RemDAq data collection INTEGRATE data reduction PHASER phasing