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1.75 Angstrom Crystal Structure of Transcriptional Regulator ftom Vibrio vulnificus.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 295 Protein: 7.6mg/mL, 0.5M Sodium cloride, 0.01M Tris-HCl pH 8.3;
Screen: PACT (D6), 0.1M MMT buffer pH 9.0, 25% (w/v) PEG 1500, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.76 29.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.742 α = 90 b = 70.74 β = 90 c = 35.746 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD Beryllium lenses 2012-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 30 97.6 0.095 31.3 6.9 16622 16622 -3 21.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.78 83.6 0.482 3.3 5.8 713
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.75 28.53 15662 15662 847 97.5 0.18366 0.18366 0.18157 0.1961 0.22341 0.234 RANDOM 21.626
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.88 4.4 -1.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.073 r_dihedral_angle_4_deg 12.816 r_dihedral_angle_3_deg 9.897 r_scangle_it 5.193 r_scbond_it 3.176 r_dihedral_angle_1_deg 2.887 r_mcangle_it 1.904 r_angle_refined_deg 1.227 r_mcbond_it 1.158 r_angle_other_deg 0.811
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.073 r_dihedral_angle_4_deg 12.816 r_dihedral_angle_3_deg 9.897 r_scangle_it 5.193 r_scbond_it 3.176 r_dihedral_angle_1_deg 2.887 r_mcangle_it 1.904 r_angle_refined_deg 1.227 r_mcbond_it 1.158 r_angle_other_deg 0.811 r_mcbond_other 0.398 r_chiral_restr 0.077 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1148 Nucleic Acid Atoms Solvent Atoms 149 Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection PHENIX model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling PHENIX phasing