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Crystal structure of EGFR kinase T790M in complex with BIBW2992
Crystallization Crystal Properties Matthews coefficient Solvent content 2.61 52.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.23 α = 90 b = 89.43 β = 90 c = 164.68 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.17 82.48 89.9 0.13 4.9 4.3 11931
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.17 3.43 88.8 0.355 1.8 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.17 82.48 11432 472 88.63 0.24658 0.24353 0.2361 0.32265 0.3126 RANDOM 43.003
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.04 -1.2 -2.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.618 r_dihedral_angle_3_deg 15.659 r_dihedral_angle_4_deg 13.601 r_dihedral_angle_1_deg 6.55 r_scangle_it 3.528 r_scbond_it 2.363 r_mcangle_it 1.792 r_mcbond_it 1.434 r_angle_refined_deg 1.065 r_angle_other_deg 0.718
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.618 r_dihedral_angle_3_deg 15.659 r_dihedral_angle_4_deg 13.601 r_dihedral_angle_1_deg 6.55 r_scangle_it 3.528 r_scbond_it 2.363 r_mcangle_it 1.792 r_mcbond_it 1.434 r_angle_refined_deg 1.065 r_angle_other_deg 0.718 r_nbd_refined 0.226 r_mcbond_other 0.187 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.181 r_symmetry_vdw_other 0.178 r_nbd_other 0.17 r_symmetry_vdw_refined 0.121 r_nbtor_other 0.081 r_chiral_restr 0.058 r_xyhbond_nbd_other 0.04 r_symmetry_hbond_refined 0.01 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4830 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling