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Human PDE9 in complex with selective compound
Crystallization Crystal Properties Matthews coefficient Solvent content 4.73 73.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.226 α = 90 b = 104.226 β = 90 c = 270.476 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 50 99 30918 30608 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 3 49.81 27383 3148 99.15 0.18585 0.18244 0.189 0.21439 0.2167 RANDOM 37.088
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.76 1.76 -3.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.578 r_dihedral_angle_4_deg 20.401 r_dihedral_angle_3_deg 19.731 r_dihedral_angle_1_deg 6.189 r_scangle_it 2.943 r_scbond_it 1.89 r_angle_refined_deg 1.869 r_angle_other_deg 1.058 r_mcangle_it 1.039 r_mcbond_it 0.862
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.578 r_dihedral_angle_4_deg 20.401 r_dihedral_angle_3_deg 19.731 r_dihedral_angle_1_deg 6.189 r_scangle_it 2.943 r_scbond_it 1.89 r_angle_refined_deg 1.869 r_angle_other_deg 1.058 r_mcangle_it 1.039 r_mcbond_it 0.862 r_symmetry_vdw_refined 0.27 r_symmetry_vdw_other 0.265 r_nbd_refined 0.253 r_symmetry_hbond_refined 0.22 r_nbtor_refined 0.205 r_nbd_other 0.198 r_xyhbond_nbd_refined 0.14 r_mcbond_other 0.139 r_nbtor_other 0.098 r_chiral_restr 0.092 r_bond_refined_d 0.021 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5412 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 58
Software Software Software Name Purpose REFMAC refinement