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Full-length Certhrax toxin from Bacillus cereus in complex with Inhibitor P6
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4GF1 Certhrax full-length
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 291 2.4 M sodium malonate, 10 mM HEPES, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.74 55.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.31 α = 90 b = 100.29 β = 90 c = 191.09 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MARMOSAIC 225 mm CCD 2011-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9762 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9599 48.503 99.2 84767 84731 2 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9599 2.03 98
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT Certhrax full-length 1.9599 48.503 2 84731 4236 99.14 0.1894 0.1874 0.1858 0.2269 0.2234 random
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.4387 2.5762 -3.015
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 13.689 f_angle_d 1.012 f_chiral_restr 0.074 f_bond_d 0.007 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7296 Nucleic Acid Atoms Solvent Atoms 493 Heterogen Atoms 57
Software Software Software Name Purpose MxDC data collection PHASER phasing PHENIX model building PHENIX refinement AutoProcess data reduction BEST data reduction pointless data scaling XDS data reduction HKL-2000 data reduction iMOSFLM data reduction SCALA data scaling PHENIX phasing