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Crystal structure of ATP bound MatB from Rhodopseudomonas palustris
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FUQ apo-rpMatb
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 (Bis-Tris buffer (100 mM, pH 6.5) containing trimethylammonium chloride (25 mM), polyethylene glycol 8000 (19.5 %, w/v), glycerol (5 %, w/v), VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.74 67.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 173.14 α = 90 b = 173.14 β = 90 c = 47.739 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r Rosenbaum-Rock double-crystal monochromator: Water cooled; sagitally focusing 2nd crystal, Rosenbaum-Rock vertical focusing mirror 2011-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.98 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 25 100 0.059 0.059 47.867 12.3 686070 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 100 0.454 0.442 7.3 10.8 5358
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT apo-rpMatb 2 24.991 0.16 108020 53454 2718 95.9 0.1598 0.1578 0.1962 0.1919 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.9856 -0.9856 1.9713
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.325 f_angle_d 1.052 f_chiral_restr 0.066 f_bond_d 0.007 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3887 Nucleic Acid Atoms Solvent Atoms 609 Heterogen Atoms 68
Software Software Software Name Purpose HKL-3000 data collection PHASER phasing PHENIX refinement HKL-3000 data reduction HKL-3000 data scaling