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Urate oxidase-azide complex in anaerobic conditions
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3P9F PDB ENTRY 3P9F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 10 291 PROTEIN AT 20 MG/ML IN 50 MM TRIS BUFFER, 0.3 M SODIUM AZIDE, SATURATED WITH URIC ACID, pH 10.0, BATCH METHOD - STTING DROPS, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.81 58.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.858 α = 90 b = 95.338 β = 90 c = 104.777 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 291 CCD ADSC QUANTUM 315r BENT MIRROR 2009-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.982 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 38.23 97.8 0.054 3.4 4.2 27917 26720 4 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.1 93.9 0.195 19.5 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS NONE PDB ENTRY 3P9F 1.98 38.23 2 27917 26720 98.7 0.19 0.189 0.2304 NONE
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 7 2545.8
RMS Deviations Key Refinement Restraint Deviation s_angle_d 0.077 s_similar_adp_cmpnt 0.073 s_non_zero_chiral_vol 0.042 s_zero_chiral_vol 0.035 s_bond_d 0.034 s_anti_bump_dis_restr 0.027 s_from_restr_planes 0.0258 s_similar_dist s_rigid_bond_adp_cmpnt s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2359 Nucleic Acid Atoms Solvent Atoms 173 Heterogen Atoms 13
Software Software Software Name Purpose ADSC data collection SHELXL refinement SHELXL-97 refinement MOSFLM data reduction SCALA data scaling TRUNCATE data scaling