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Crystal structure of a BLIP-like protein (BF1215) from Bacteroides fragilis NCTC 9343 at 1.20 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 2.00M ammonium sulfate, 0.1M TRIS pH 8.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.31 46.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.879 α = 90 b = 36.977 β = 90 c = 115.061 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Vertical focusing mirror; double crystal Si(111) monochromator 2012-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL14-1 SSRL BL14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 115.061 99.8 0.046 13 5.1 48774 48774 17.008
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.23 99.1 0.725 0.725 1.4 4 3484
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.2 115.061 48663 2461 99.68 0.147 0.1458 0.1717 0.2028 RANDOM 25.6264
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 0.35 -0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.686 r_dihedral_angle_4_deg 19.08 r_dihedral_angle_3_deg 11.167 r_sphericity_free 9.226 r_scangle_it 6.633 r_dihedral_angle_1_deg 6.183 r_sphericity_bonded 5.987 r_scbond_it 4.609 r_mcangle_it 3.986 r_mcbond_it 2.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.686 r_dihedral_angle_4_deg 19.08 r_dihedral_angle_3_deg 11.167 r_sphericity_free 9.226 r_scangle_it 6.633 r_dihedral_angle_1_deg 6.183 r_sphericity_bonded 5.987 r_scbond_it 4.609 r_mcangle_it 3.986 r_mcbond_it 2.7 r_mcbond_other 2.25 r_rigid_bond_restr 2.045 r_angle_refined_deg 1.482 r_angle_other_deg 0.95 r_chiral_restr 0.099 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1114 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction SHARP phasing SHELX phasing SCALA data scaling REFMAC refinement MOSFLM data reduction SHELXD phasing