X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION7.529125% PEG-3350, 0.2M ammonium acetate, 0.1M HEPES, pH 7.5, vapor diffusion, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
3.160.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.221α = 90
b = 100.221β = 90
c = 142.887γ = 90
Symmetry
Space GroupP 4 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDADSC QUANTUM 3152012-02-24MSINGLE WAVELENGTH
21x-rayCCDMARMOSAIC 300 mm CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-ID0.97931APS19-ID
2SYNCHROTRONAPS BEAMLINE 23-ID-B0.97944APS23-ID-B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1,22.247.6399.980.11615.53519.6237701
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1,22.22.321000.939.815387

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.24037678158799.8670.2330.23160.2575thin shells (sftools)44.226
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.7911.791-3.583
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.544
r_dihedral_angle_3_deg14.351
r_dihedral_angle_4_deg13.181
r_dihedral_angle_1_deg4.173
r_angle_other_deg1.326
r_angle_refined_deg1.311
r_chiral_restr0.066
r_bond_refined_d0.013
r_bond_other_d0.007
r_gen_planes_refined0.007
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.544
r_dihedral_angle_3_deg14.351
r_dihedral_angle_4_deg13.181
r_dihedral_angle_1_deg4.173
r_angle_other_deg1.326
r_angle_refined_deg1.311
r_chiral_restr0.066
r_bond_refined_d0.013
r_bond_other_d0.007
r_gen_planes_refined0.007
r_gen_planes_other0.005
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3871
Nucleic Acid Atoms
Solvent Atoms148
Heterogen Atoms7

Software

Software
Software NamePurpose
SCALAdata scaling
SHELXphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction