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Crystal structure of ALD1 from Arabidopsis thaliana
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Microbatch under oil 5.5 277 100 mM sodium citrate tribasic dihydrate, 2.2mM FOS-Choline -8 fluorinated, and 18% polyethylene glycol 3,350, pH 5.5, Microbatch under oil, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.3 46.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.28 α = 90 b = 89.87 β = 90 c = 180.7 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9724 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 7.4 55617 54171
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 83.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 48.42 52618 40152 2136 99.88 0.20708 0.20532 0.2093 0.24097 0.2418 RANDOM 38.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.24 4.48 -4.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.123 r_dihedral_angle_4_deg 19.086 r_dihedral_angle_3_deg 15.81 r_dihedral_angle_1_deg 6.552 r_scangle_it 4.747 r_scbond_it 3.086 r_mcangle_it 1.821 r_angle_refined_deg 1.722 r_angle_other_deg 1.094 r_mcbond_it 1.031
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.123 r_dihedral_angle_4_deg 19.086 r_dihedral_angle_3_deg 15.81 r_dihedral_angle_1_deg 6.552 r_scangle_it 4.747 r_scbond_it 3.086 r_mcangle_it 1.821 r_angle_refined_deg 1.722 r_angle_other_deg 1.094 r_mcbond_it 1.031 r_chiral_restr 0.105 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.005 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6323 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms 32
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling