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X-ray crystal structure of Corynebacterium glutamicum Nrdh-redoxin at 1.5A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1R74 PDB ENTRIES 1R74, 1H75, 3IC4 and 1ABA experimental model PDB 1H75 PDB ENTRIES 1R74, 1H75, 3IC4 and 1ABA experimental model PDB 3IC4 PDB ENTRIES 1R74, 1H75, 3IC4 and 1ABA experimental model PDB 1ABA PDB ENTRIES 1R74, 1H75, 3IC4 and 1ABA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293.15 12% glycerol, 0.1M Tris pH 8.5, 1.8M ammonium sulphate, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
Crystal Properties Matthews coefficient Solvent content 2.52 51.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.77 α = 90 b = 61.77 β = 90 c = 77.19 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.9793 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 28.675 98.3 14472 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 94.9
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRIES 1R74, 1H75, 3IC4 and 1ABA 1.5011 28.675 2.01 14242 14472 1447 99.98 0.1931 0.1908 0.2134 0.2246 Random
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.0664 -1.0664 2.1328
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.288 f_angle_d 1.06 f_chiral_restr 0.068 f_bond_d 0.008 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 582 Nucleic Acid Atoms Solvent Atoms 66 Heterogen Atoms 17
Software Software Software Name Purpose ADSC data collection BALBES phasing PHENIX refinement XDS data reduction XSCALE data scaling