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Spore photoproduct lyase C140A mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FHC wt structure without substrate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 200 mM Li-sulfate, 100 mM Tris/HCl, 19-27% PEG800, 70 mM HEGA-8, anaerobically, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.85 56.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.02 α = 90 b = 63.03 β = 90 c = 143.62 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 PIXEL PSI PILATUS 6M 2011-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9778 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 43.17 99.3 0.081 33706 33706 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 98 0.381
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT wt structure without substrate 2 43.17 31998 31998 1706 99.3 0.22278 0.22278 0.22104 0.225 0.25621 0.2578 RANDOM 25.309
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 -0.36 0.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.22 r_dihedral_angle_4_deg 11.982 r_dihedral_angle_3_deg 10.574 r_dihedral_angle_1_deg 4.605 r_angle_refined_deg 0.817 r_scangle_it 0.814 r_angle_other_deg 0.71 r_scbond_it 0.461 r_mcangle_it 0.414 r_mcbond_it 0.219
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.22 r_dihedral_angle_4_deg 11.982 r_dihedral_angle_3_deg 10.574 r_dihedral_angle_1_deg 4.605 r_angle_refined_deg 0.817 r_scangle_it 0.814 r_angle_other_deg 0.71 r_scbond_it 0.461 r_mcangle_it 0.414 r_mcbond_it 0.219 r_chiral_restr 0.046 r_mcbond_other 0.022 r_bond_refined_d 0.005 r_gen_planes_refined 0.002 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2801 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 59
Software Software Software Name Purpose HEIDI data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling