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Structure of the effector protein Tse1 from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 200 mM KSCN, 1% (v/v) MPD, and 20% (w/v) PEG 3350, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.09 41.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.24 α = 90 b = 100.38 β = 99.35 c = 62.18 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2011-12-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9796 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 98.4 0.054 13.5 3.6 64182 63172
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 97.8 0.469 3.13 3.7 9887
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 47.62 64182 60001 3158 100 0.17648 0.17648 0.17512 0.1733 0.20269 0.2013 RANDOM 31.008
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.67 0.41 -0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.54 r_dihedral_angle_4_deg 19.426 r_dihedral_angle_3_deg 12.427 r_dihedral_angle_1_deg 5.114 r_scangle_it 2.218 r_scbond_it 1.372 r_angle_refined_deg 0.995 r_mcangle_it 0.826 r_mcbond_it 0.452 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.54 r_dihedral_angle_4_deg 19.426 r_dihedral_angle_3_deg 12.427 r_dihedral_angle_1_deg 5.114 r_scangle_it 2.218 r_scbond_it 1.372 r_angle_refined_deg 0.995 r_mcangle_it 0.826 r_mcbond_it 0.452 r_nbtor_refined 0.297 r_symmetry_vdw_refined 0.236 r_nbd_refined 0.195 r_xyhbond_nbd_refined 0.125 r_symmetry_hbond_refined 0.112 r_chiral_restr 0.071 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4437 Nucleic Acid Atoms Solvent Atoms 330 Heterogen Atoms 21
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XDS data scaling