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Structure of the effector protein Tse1 from Pseudomonas aeruginosa, selenomethionine variant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 200 mM KSCN, 1% (v/v) MPD, and 15% (w/v) PEG 3350, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.48 50.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.21 α = 90 b = 108.4 β = 93.8 c = 83.76 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2012-02-13 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9794 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 99.5 0.092 9.3 21440 21546
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.7 95.9 0.333 8.4 8.8 2189
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.6 45.45 21546 20367 1072 100 0.2079 0.2079 0.20559 0.2064 0.25112 0.253 RANDOM 26.638
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.43 -0.22 -1.27 -1.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.678 r_dihedral_angle_4_deg 17.282 r_dihedral_angle_3_deg 15.437 r_dihedral_angle_1_deg 5.301 r_scangle_it 2.036 r_scbond_it 1.298 r_angle_refined_deg 1.103 r_mcangle_it 0.815 r_mcbond_it 0.418 r_symmetry_vdw_refined 0.322
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.678 r_dihedral_angle_4_deg 17.282 r_dihedral_angle_3_deg 15.437 r_dihedral_angle_1_deg 5.301 r_scangle_it 2.036 r_scbond_it 1.298 r_angle_refined_deg 1.103 r_mcangle_it 0.815 r_mcbond_it 0.418 r_symmetry_vdw_refined 0.322 r_nbtor_refined 0.292 r_nbd_refined 0.194 r_xyhbond_nbd_refined 0.115 r_symmetry_hbond_refined 0.098 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4392 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 10
Software Software Software Name Purpose SHELXD phasing SHELXE model building REFMAC refinement XDS data reduction XDS data scaling