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SeMet-labeled PylC (remote)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Experimental phase determination by data collection at the Se edge (2.0 A resolution; the deposited mtz file is from the remote wavelength at 1.0 A resolution)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.1M MES; 200mM MgCl2, 25% PEG4000 , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.99 38.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.83 α = 90 b = 61.83 β = 90 c = 171.95 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2012-02-25 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0, 2.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 30 99 0.058 15.7 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 96 0.512 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT Experimental phase determination by data collection at the Se edge (2.0 A resolution; the deposited mtz file is from the remote wavelength at 1.0 A resolution) 1.8 10 30145 30145 1587 99.66 0.17302 0.17149 0.1736 0.20146 0.2034 RANDOM 25.969
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.93 0.93 -1.86
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.881 r_sphericity_free 20.035 r_dihedral_angle_4_deg 19.167 r_dihedral_angle_3_deg 13.955 r_sphericity_bonded 5.817 r_dihedral_angle_1_deg 5.045 r_rigid_bond_restr 1.468 r_angle_refined_deg 1.265 r_chiral_restr 0.073 r_bond_refined_d 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.881 r_sphericity_free 20.035 r_dihedral_angle_4_deg 19.167 r_dihedral_angle_3_deg 13.955 r_sphericity_bonded 5.817 r_dihedral_angle_1_deg 5.045 r_rigid_bond_restr 1.468 r_angle_refined_deg 1.265 r_chiral_restr 0.073 r_bond_refined_d 0.006 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2748 Nucleic Acid Atoms Solvent Atoms 197 Heterogen Atoms 66
Software Software Software Name Purpose XDS data scaling REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing