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Catalytic domain of germination-specific lytic tansglycosylase SleB from Bacillus anthracis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 1:1 mixture of 2.5 mg/mL protein and a crystallization solution composed of 0.2M ammonium sulfate, 0.1M Bis-Tris (pH 5.8) and 15% w/v polyethylene glycol 3350, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 1.5 17.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.85 α = 90 b = 64.45 β = 90 c = 84.02 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-11-21 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315 2011-12-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 0.9792 NSLS X29A 2 SYNCHROTRON NSLS BEAMLINE X29A 0.9611, 0.9794 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.909 32.22 99 23345
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.909 2 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.909 32.22 22136 22134 1211 99.85 0.20511 0.20269 0.2054 0.24867 0.2531 RANDOM 17.474
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.298 r_dihedral_angle_3_deg 15.155 r_dihedral_angle_4_deg 10.441 r_dihedral_angle_1_deg 6.892 r_angle_refined_deg 2.169 r_chiral_restr 0.183 r_bond_refined_d 0.023 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.298 r_dihedral_angle_3_deg 15.155 r_dihedral_angle_4_deg 10.441 r_dihedral_angle_1_deg 6.892 r_angle_refined_deg 2.169 r_chiral_restr 0.183 r_bond_refined_d 0.023 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1896 Nucleic Acid Atoms Solvent Atoms 248 Heterogen Atoms 2
Software Software Software Name Purpose CCP4 refinement PHENIX model building REFMAC refinement CCP4 data reduction CCP4 data scaling PHENIX phasing