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Inhibitor bound structure of the kinase domain of the murine receptor tyrosine kinase TYRO3 (Sky)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 295 17% PEG 3350, 0.1M magnesium nitrate, 0.1 M Bis-Tris, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.3 46.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.778 α = 90 b = 57.157 β = 100.69 c = 60.676 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 210r 2005-06-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 91.8 16496 15143 3.5 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 47.67 15143 14373 762 91.73 0.27806 0.27546 0.2688 0.32713 0.3167 RANDOM 51.65
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 -0.16 -0.54 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.013 r_dihedral_angle_4_deg 18.253 r_dihedral_angle_3_deg 16.974 r_dihedral_angle_1_deg 4.992 r_scangle_it 1.967 r_scbond_it 1.293 r_mcangle_it 1.249 r_angle_refined_deg 1.175 r_mcbond_it 0.71 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.013 r_dihedral_angle_4_deg 18.253 r_dihedral_angle_3_deg 16.974 r_dihedral_angle_1_deg 4.992 r_scangle_it 1.967 r_scbond_it 1.293 r_mcangle_it 1.249 r_angle_refined_deg 1.175 r_mcbond_it 0.71 r_nbtor_refined 0.298 r_symmetry_vdw_refined 0.203 r_nbd_refined 0.189 r_xyhbond_nbd_refined 0.167 r_symmetry_hbond_refined 0.161 r_chiral_restr 0.067 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1776 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 33
Software Software Software Name Purpose ADSC data collection REFMAC refinement DENZO data reduction SCALEPACK data scaling REFMAC phasing