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LipS and LipT, two metagenome-derived lipolytic enzymes increase the diversity of known lipase and esterase families
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TQH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.5 292 0.1 M NaAcetate, 3 M NaCl,0.01 M spermidine, pH 4.5, VAPOR DIFFUSION, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.64 53.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.27 α = 90 b = 105.27 β = 90 c = 120.98 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Monochromator (horizontally side diffracting Silicon 111 crystal) 2011-11-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.87 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 40.3 100 0.11 9.8 5.1 90469 85910 2 2 29
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.1 100 0.8 2 5 13179
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1TQH 1.99 40.3 2 2 90469 85910 4534 99.95 0.17805 0.17602 0.1782 0.21679 0.2176 RANDOM 28.736
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.9 0.9 -1.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.334 r_dihedral_angle_4_deg 20.096 r_dihedral_angle_3_deg 16.412 r_dihedral_angle_1_deg 6.533 r_scangle_it 5.658 r_scbond_it 3.641 r_angle_refined_deg 2.193 r_mcangle_it 2.16 r_mcbond_it 1.306 r_chiral_restr 0.163
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.334 r_dihedral_angle_4_deg 20.096 r_dihedral_angle_3_deg 16.412 r_dihedral_angle_1_deg 6.533 r_scangle_it 5.658 r_scbond_it 3.641 r_angle_refined_deg 2.193 r_mcangle_it 2.16 r_mcbond_it 1.306 r_chiral_restr 0.163 r_bond_refined_d 0.029 r_gen_planes_refined 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7418 Nucleic Acid Atoms Solvent Atoms 608 Heterogen Atoms 34
Software Software Software Name Purpose DNA data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling