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Crystal Structure of the Salicylate 1,2-dioxygenase from Pseudoaminobacter salicylatoxidans W104Y mutant in complex with gentisate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 277 8% PEG10000, pH 8.0, vapor diffusion, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.37 63.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.351 α = 90 b = 87.908 β = 90 c = 167.078 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2009-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.8123 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 57.17 97.5 0.094 0.094 9.7 3 18973
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 98.3 0.392 0.392 2.2 3 2767
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.5 38.9 18971 968 96.69 0.1958 0.192 0.191 0.2681 0.2631 RANDOM 47.4035
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 0.09 -0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.1 r_dihedral_angle_4_deg 20.168 r_dihedral_angle_3_deg 19.792 r_dihedral_angle_1_deg 7.598 r_scangle_it 3.555 r_scbond_it 2.193 r_angle_refined_deg 1.918 r_mcangle_it 1.667 r_mcbond_it 0.899 r_chiral_restr 0.121
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.1 r_dihedral_angle_4_deg 20.168 r_dihedral_angle_3_deg 19.792 r_dihedral_angle_1_deg 7.598 r_scangle_it 3.555 r_scbond_it 2.193 r_angle_refined_deg 1.918 r_mcangle_it 1.667 r_mcbond_it 0.899 r_chiral_restr 0.121 r_bond_refined_d 0.018 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2827 Nucleic Acid Atoms Solvent Atoms 208 Heterogen Atoms 18
Software Software Software Name Purpose MOSFLM data reduction REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection SCALA data scaling