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Ribosomal protein L1 from Thermus thermophilus with substitution Thr217Ala
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 10 295 15 MG/ML L1 50 MM GLYCINE,INITIALLY AT PH 10 5% (V/V)METHANE PENTANEDIOL 1.2 M AMMONIUM SULFATE EQUILIBRATED AGAINST 2.4 M AMMONIUM SULFATE 7% (V/V) METHANE PENTANEDIOL , VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.21 44.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.94 α = 90 b = 62.12 β = 90 c = 43.62 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 neutron 100 IMAGE PLATE MAR scanner 345 mm plate COLLIMATOR 0.3X0.3 2005-05-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 1.072 EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 20 97.8 0.037 0.045 25.2 7 38935 38090 21
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.46 1.6 94.1 0.139 0.195 9.4 6.8 8632
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.46 15 38935 36430 1916 94.7 0.166 0.16561 0.16366 0.1627 0.20246 0.206 RANDOM 22.505
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.04 -0.2 -1.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.858 r_sphericity_free 24.757 r_sphericity_bonded 15.101 r_dihedral_angle_4_deg 11.823 r_scangle_it 10.087 r_dihedral_angle_3_deg 9.053 r_rigid_bond_restr 8.589 r_scbond_it 8.494 r_mcangle_it 8.296 r_mcbond_it 7.535
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.858 r_sphericity_free 24.757 r_sphericity_bonded 15.101 r_dihedral_angle_4_deg 11.823 r_scangle_it 10.087 r_dihedral_angle_3_deg 9.053 r_rigid_bond_restr 8.589 r_scbond_it 8.494 r_mcangle_it 8.296 r_mcbond_it 7.535 r_dihedral_angle_1_deg 3.2 r_angle_refined_deg 1.428 r_nbtor_refined 0.319 r_nbd_refined 0.248 r_symmetry_vdw_refined 0.242 r_symmetry_hbond_refined 0.194 r_xyhbond_nbd_refined 0.184 r_chiral_restr 0.107 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1720 Nucleic Acid Atoms Solvent Atoms 305 Heterogen Atoms 82
Software Software Software Name Purpose XPLAN data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling