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Penicillium canescens endo-1,4-beta-xylanase XylE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3CUI PDB ENTRY 3CUI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 Protein solution (2mcl): 10mg/ml XylE, deionized water. Reservoir solution (2mcl): 0.1 M HEPES, 22% w/v PEG 3350, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.09 41.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.23 α = 90 b = 60.29 β = 115.2 c = 55.62 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2010-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON KURCHATOV SNC BEAMLINE K4.4 0.9887 KURCHATOV SNC K4.4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.47 50.33 98.9 0.05 26.3 51675 51675 18.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.47 1.5 88.3 0.399 3.8 2661
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3CUI 1.47 10 49037 2638 99.07 0.14683 0.1456 0.1441 0.1698 0.1672 RANDOM 12.051
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.25 -0.55 -0.36 -0.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.125 r_dihedral_angle_4_deg 13.6 r_dihedral_angle_3_deg 11.741 r_dihedral_angle_1_deg 6.855 r_scangle_it 3.505 r_scbond_it 2.305 r_angle_refined_deg 1.807 r_mcangle_it 1.615 r_angle_other_deg 0.982 r_mcbond_it 0.954
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.125 r_dihedral_angle_4_deg 13.6 r_dihedral_angle_3_deg 11.741 r_dihedral_angle_1_deg 6.855 r_scangle_it 3.505 r_scbond_it 2.305 r_angle_refined_deg 1.807 r_mcangle_it 1.615 r_angle_other_deg 0.982 r_mcbond_it 0.954 r_mcbond_other 0.323 r_chiral_restr 0.122 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2621 Nucleic Acid Atoms Solvent Atoms 366 Heterogen Atoms 75
Software Software Software Name Purpose AUTOMAR data collection BALBES phasing REFMAC refinement XDS data reduction XSCALE data scaling