☰ Navigation Tabs
X-ray structure of PsaA from Yersinia pestis, in complex with galactose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 298 1.4 M Sodium Formate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.12 60.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.266 α = 90 b = 59.266 β = 90 c = 200.088 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2010-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 91.7 0.09 14.8 4.7 22657
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.07 2.14 72.8 0.562 1.7 1779
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.05 25 22654 1158 91.75 0.2453 0.2434 0.2454 0.2787 0.2802 RANDOM 50.2723
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.92 0.96 1.92 -2.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.187 r_dihedral_angle_3_deg 21.51 r_scangle_it 9.121 r_dihedral_angle_4_deg 8.701 r_dihedral_angle_1_deg 7.587 r_scbond_it 6.522 r_mcangle_it 5.467 r_angle_other_deg 5.178 r_mcbond_it 3.553 r_angle_refined_deg 1.724
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.187 r_dihedral_angle_3_deg 21.51 r_scangle_it 9.121 r_dihedral_angle_4_deg 8.701 r_dihedral_angle_1_deg 7.587 r_scbond_it 6.522 r_mcangle_it 5.467 r_angle_other_deg 5.178 r_mcbond_it 3.553 r_angle_refined_deg 1.724 r_chiral_restr 0.11 r_bond_other_d 0.067 r_mcbond_other 0.033 r_bond_refined_d 0.018 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2224 Nucleic Acid Atoms Solvent Atoms 49 Heterogen Atoms 44
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection