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Crystal structure of the glutathione transferase URE2P1 from Phanerochaete chrysosporium.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3GXO PDB ENTRY 3GXO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 5.6 277 20% (v/v) 2-propanol, 20% (w/v) PEG-4000, 0.1M sodium citrate tribasic dihydrate, pH 5.6, MICROBATCH, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.23 44.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.907 α = 90 b = 53.947 β = 90 c = 165.225 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2011-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.980557 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 48.65 94.7 0.026 24.9 7.4 77259 77259
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.53 81.3 0.262 7.3 6.9
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 3GXO 1.45 45.169 77182 77182 3868 94.53 0.142 0.142 0.1408 0.1649 0.1562 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2988 2.6376 -2.3388
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.95 f_angle_d 1.456 f_chiral_restr 0.098 f_bond_d 0.015 f_plane_restr 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3542 Nucleic Acid Atoms Solvent Atoms 516 Heterogen Atoms 92
Software Software Software Name Purpose ADSC data collection MOLREP phasing PHENIX refinement XDS data reduction SCALA data scaling