☰ Navigation Tabs
Study on structure and function relationships in human Pirin with Manganese ion
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 289 PEG 20000, 0.1M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.35 47.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.163 α = 90 b = 67.034 β = 90 c = 107.156 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2011-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.80 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.56 50 98.1 0.077 25.3 6.9 44260 43419
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.56 1.59 97.5 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.56 35.69 41428 1933 98.05 0.13676 0.13528 0.1398 0.16742 0.1644 RANDOM 16.625
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.06 6.34 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.15 r_dihedral_angle_4_deg 24.903 r_sphericity_free 23.921 r_rigid_bond_restr 13.701 r_dihedral_angle_3_deg 12.905 r_sphericity_bonded 9.742 r_dihedral_angle_1_deg 6.932 r_angle_refined_deg 2.285 r_angle_other_deg 2.183 r_chiral_restr 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.15 r_dihedral_angle_4_deg 24.903 r_sphericity_free 23.921 r_rigid_bond_restr 13.701 r_dihedral_angle_3_deg 12.905 r_sphericity_bonded 9.742 r_dihedral_angle_1_deg 6.932 r_angle_refined_deg 2.285 r_angle_other_deg 2.183 r_chiral_restr 0.21 r_bond_refined_d 0.026 r_gen_planes_other 0.014 r_gen_planes_refined 0.013 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2247 Nucleic Acid Atoms Solvent Atoms 298 Heterogen Atoms 17
Software Software Software Name Purpose SERGUI data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling