☰ Navigation Tabs
X-ray structure of PA2169 from Pseudomonas aeruginosa
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3FSE PDB ENTRY 3FSE, trimmed to the 4 helix module, side chains removed
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 19% PEG10K, 100 mM Na-acetate pH 4.6, SrCl2 20mM, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.91 35.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.576 α = 90 b = 71.219 β = 111.62 c = 48.781 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315r mirrors 2009-04-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.976250 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 45.36 96.8 0.092 0.092 8.5 3.5 12342 11947 2.6 2.6 36.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.37 96.2 0.485 0.485 2.6 3.5 1726
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3FSE, trimmed to the 4 helix module, side chains removed 2.25 45.35 2.6 12342 11347 592 96.74 0.22381 0.22381 0.22079 0.2285 0.28474 0.2989 RANDOM 40.997
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.93 3.1 -2.77 -0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.55 r_dihedral_angle_3_deg 18.698 r_dihedral_angle_4_deg 16.455 r_dihedral_angle_1_deg 5.816 r_scangle_it 4.254 r_scbond_it 2.495 r_mcangle_it 1.566 r_angle_refined_deg 1.507 r_mcbond_it 0.816 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.55 r_dihedral_angle_3_deg 18.698 r_dihedral_angle_4_deg 16.455 r_dihedral_angle_1_deg 5.816 r_scangle_it 4.254 r_scbond_it 2.495 r_mcangle_it 1.566 r_angle_refined_deg 1.507 r_mcbond_it 0.816 r_chiral_restr 0.092 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1908 Nucleic Acid Atoms Solvent Atoms 21 Heterogen Atoms
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling