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Crystal structure of human ryanodine receptor 3 (2597-2800)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9.5 295 1.4M Ammonium sulfate, 0.1M Bicine, pH 9.5, vapor diffusion, hanging drop, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.72 54.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.57 α = 90 b = 58.54 β = 97.21 c = 47.46 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD Double Crystal Monochromator, mirrors 2011-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9795 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 50 98.1 0.035 20.3 3.6 25284 -3 34.27
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.8 99.2 0.452 3.15
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 35.35 25284 25283 1265 98.09 0.1914 0.1899 0.2201 0.2283 RANDOM 26.9336
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.63 -0.7 -1.44 1.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.297 r_dihedral_angle_4_deg 22.178 r_dihedral_angle_3_deg 11.902 r_dihedral_angle_1_deg 5.144 r_rigid_bond_restr 4.245 r_angle_refined_deg 1.214 r_chiral_restr 0.075 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_sphericity_free
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.297 r_dihedral_angle_4_deg 22.178 r_dihedral_angle_3_deg 11.902 r_dihedral_angle_1_deg 5.144 r_rigid_bond_restr 4.245 r_angle_refined_deg 1.214 r_chiral_restr 0.075 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1528 Nucleic Acid Atoms Solvent Atoms 209 Heterogen Atoms 33
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction MxDC data collection XDS data reduction XDS data scaling PHASER phasing