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Crystal structure of GPb in complex with DK10
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3SYM PDB entry 3SYM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 SMALL TUBES 6.7 289 10mM BES buffer, pH 6.7, SMALL TUBES, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.51 50.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.389 α = 90 b = 128.389 β = 90 c = 116.316 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD AGILENT ATLAS CCD 2011-10-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION ENHANCE ULTRA 1.5419
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 13.7 96.6 0.1 13.3 4.2 27709 27709
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.79 89.5 0.479 1.8 1.8 3782
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB entry 3SYM 2.65 13.63 26290 26290 1405 96.89 0.16311 0.15934 0.1573 0.23348 0.2307 RANDOM 27.853
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.847 r_dihedral_angle_4_deg 20.725 r_dihedral_angle_3_deg 18.871 r_dihedral_angle_1_deg 6.501 r_scangle_it 4.432 r_scbond_it 2.566 r_angle_refined_deg 1.709 r_mcangle_it 1.661 r_mcbond_it 0.831 r_chiral_restr 0.118
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.847 r_dihedral_angle_4_deg 20.725 r_dihedral_angle_3_deg 18.871 r_dihedral_angle_1_deg 6.501 r_scangle_it 4.432 r_scbond_it 2.566 r_angle_refined_deg 1.709 r_mcangle_it 1.661 r_mcbond_it 0.831 r_chiral_restr 0.118 r_bond_refined_d 0.017 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6605 Nucleic Acid Atoms Solvent Atoms 136 Heterogen Atoms 26
Software Software Software Name Purpose CrysalisPro data collection REFMAC refinement CrysalisPro data reduction SCALA data scaling REFMAC phasing