☰ Navigation Tabs
Crystal structure of cytochrome c6C from Synechococcus sp. PCC 7002
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 292 Protein solution: 15 mg/ml cytochrome c6C in 0.1 M TRIS pH 7.5, 0.2 M NaCl and 1 mM PMSF; Precipitant solution: 2 M NaCl and 2 M (NH4)2SO4. pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.08 40.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.13 α = 90 b = 56.13 β = 90 c = 49.64 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR555 FLAT PANEL mirrors 2010-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.8149 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.03 21.04 99.3 0.088 21.8 23.4 39532 39532 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.03 1.09 100 0.832 2.9 13.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.03 19.84 38488 38488 1017 99.23 0.13671 0.13602 0.1385 0.16344 0.1624 RANDOM 9.113
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.07 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.742 r_dihedral_angle_3_deg 10.648 r_dihedral_angle_4_deg 8.953 r_dihedral_angle_1_deg 5.711 r_scangle_it 4.395 r_scbond_it 3.146 r_mcangle_it 2.567 r_angle_refined_deg 1.898 r_mcbond_it 1.816 r_rigid_bond_restr 1.373
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.742 r_dihedral_angle_3_deg 10.648 r_dihedral_angle_4_deg 8.953 r_dihedral_angle_1_deg 5.711 r_scangle_it 4.395 r_scbond_it 3.146 r_mcangle_it 2.567 r_angle_refined_deg 1.898 r_mcbond_it 1.816 r_rigid_bond_restr 1.373 r_angle_other_deg 1.223 r_mcbond_other 0.617 r_chiral_restr 0.139 r_bond_refined_d 0.021 r_gen_planes_refined 0.014 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 621 Nucleic Acid Atoms Solvent Atoms 126 Heterogen Atoms 51
Software Software Software Name Purpose AUTOMAR data collection Auto-Rickshaw phasing REFMAC refinement MOSFLM data reduction SCALA data scaling