☰ Navigation Tabs
The X-ray crystal structure of CYP199A4 in complex with veratric acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4DNZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 0.1M Bis-tris, 1.45M (NH4)2SO4, 0.1M NaCl, 30%(w/v) 1,5-Diaminopentane dihydrochloride, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.7 66.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 106.534 α = 90 b = 143.444 β = 90 c = 172.82 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD mirrors M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9796 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 98.5 0.1 0.07 16.6 6 178866 176183 1 1 23.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 98.5 0.595 0.531 3.05 5.7 17439
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4DNZ 2 30.44 170200 167273 8818 98.28 0.17257 0.17075 0.174 0.20747 0.2084 RANDOM 23.848
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.404 r_dihedral_angle_4_deg 17.063 r_dihedral_angle_3_deg 13.53 r_dihedral_angle_1_deg 6.17 r_scangle_it 5.322 r_scbond_it 3.525 r_angle_refined_deg 2.094 r_mcangle_it 1.983 r_mcbond_it 1.212 r_chiral_restr 0.177
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.404 r_dihedral_angle_4_deg 17.063 r_dihedral_angle_3_deg 13.53 r_dihedral_angle_1_deg 6.17 r_scangle_it 5.322 r_scbond_it 3.525 r_angle_refined_deg 2.094 r_mcangle_it 1.983 r_mcbond_it 1.212 r_chiral_restr 0.177 r_bond_refined_d 0.028 r_gen_planes_refined 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12084 Nucleic Acid Atoms Solvent Atoms 1317 Heterogen Atoms 298
Software Software Software Name Purpose HKL-2000 data collection CCP4 model building REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling CCP4 phasing