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Crystal Structure of the Novel Phenazine Prenyltransferase EpzP in complex with S-thiolodiphosphate (methylated)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 293 200 mM (NH4)2SO4, 30% (w/v) PEG2000MME, 100 mM sodium acetate 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.07 40.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.11 α = 90 b = 97.01 β = 90 c = 135.86 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-05-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.00000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.67 30 99.8 65578 65469 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.67 1.71 99.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION PHASER THROUGHOUT 1.67 29.39 62847 62847 2619 100 0.18908 0.18765 0.195 0.22383 0.229 RANDOM 15.188
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 0.5 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.525 r_dihedral_angle_3_deg 12.842 r_dihedral_angle_4_deg 10.511 r_dihedral_angle_1_deg 6.053 r_scangle_it 3.617 r_scbond_it 2.581 r_mcangle_it 2.188 r_mcbond_it 1.523 r_angle_refined_deg 1.418 r_angle_other_deg 0.872
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.525 r_dihedral_angle_3_deg 12.842 r_dihedral_angle_4_deg 10.511 r_dihedral_angle_1_deg 6.053 r_scangle_it 3.617 r_scbond_it 2.581 r_mcangle_it 2.188 r_mcbond_it 1.523 r_angle_refined_deg 1.418 r_angle_other_deg 0.872 r_mcbond_other 0.658 r_chiral_restr 0.091 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4480 Nucleic Acid Atoms Solvent Atoms 634 Heterogen Atoms 83
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling