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Crystal Structure of the Novel Phenazine Prenyltransferase EpzP (methylated)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 200 mM magnesium chloride, 30% (w/v) PEG4000, Tris hydrochloride ph 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.05 40.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.14 α = 90 b = 135.6 β = 95.73 c = 48.53 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-08-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.00000 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.33 30 93.6 123759 115868 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.33 1.36 63.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.33 29.93 112379 112379 3476 100 0.19088 0.19019 0.1958 0.21313 0.2184 RANDOM 10.977
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 0.17 -0.47 0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.202 r_dihedral_angle_3_deg 12.005 r_dihedral_angle_4_deg 11.894 r_dihedral_angle_1_deg 5.925 r_scangle_it 1.952 r_scbond_it 1.554 r_angle_refined_deg 1.41 r_mcangle_it 1.162 r_angle_other_deg 0.94 r_mcbond_it 0.934
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.202 r_dihedral_angle_3_deg 12.005 r_dihedral_angle_4_deg 11.894 r_dihedral_angle_1_deg 5.925 r_scangle_it 1.952 r_scbond_it 1.554 r_angle_refined_deg 1.41 r_mcangle_it 1.162 r_angle_other_deg 0.94 r_mcbond_it 0.934 r_mcbond_other 0.463 r_chiral_restr 0.089 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_gen_planes_other 0.005 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4485 Nucleic Acid Atoms Solvent Atoms 804 Heterogen Atoms 39
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling