☰ Navigation Tabs
SeMet thermostable phosphite dehydrogenase Glu175-Ala mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 25-30% PEG 3350, 100 mM KCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.63 53.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.218 α = 90 b = 122.58 β = 96.36 c = 135.015 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 98.9 0.082 19.4 4.1 98877 98877
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 98.3 0.373 3.9 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 25 91875 4850 96.43 0.21066 0.20729 0.27361 0.2767 RANDOM 40.159
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.85 2.85 -3.53 3.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.309 r_dihedral_angle_4_deg 19.379 r_dihedral_angle_3_deg 18.179 r_dihedral_angle_1_deg 6.172 r_scangle_it 2.904 r_scbond_it 1.848 r_angle_refined_deg 1.482 r_mcangle_it 1.19 r_mcbond_it 0.633 r_chiral_restr 0.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.309 r_dihedral_angle_4_deg 19.379 r_dihedral_angle_3_deg 18.179 r_dihedral_angle_1_deg 6.172 r_scangle_it 2.904 r_scbond_it 1.848 r_angle_refined_deg 1.482 r_mcangle_it 1.19 r_mcbond_it 0.633 r_chiral_restr 0.102 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15030 Nucleic Acid Atoms Solvent Atoms 754 Heterogen Atoms 176
Software Software Software Name Purpose MAR345dtb data collection SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling