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Structural of Bombyx mori glutathione transferase BmGSTD1 complex with GTT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4E8E
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 289 8% pEG 8000, 0.1M sodium acetate trihydrate (pH 4.6), VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.17 43.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.109 α = 90 b = 90.818 β = 102.77 c = 87.015 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.94968 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.11 50 95.5 0.149 0.149 13.3 6.4 51032 48736 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.11 2.19 95.5 0.3 0.3 4.6 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4E8E 2.12 47.48 46145 2465 98.53 0.19638 0.19452 0.1931 0.23075 0.2285 RANDOM 16.464
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.04 0.06 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.776 r_dihedral_angle_4_deg 21.921 r_dihedral_angle_3_deg 13.029 r_dihedral_angle_1_deg 5.4 r_scangle_it 1.067 r_angle_refined_deg 1.039 r_mcangle_it 0.809 r_scbond_it 0.602 r_mcbond_it 0.437 r_chiral_restr 0.071
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.776 r_dihedral_angle_4_deg 21.921 r_dihedral_angle_3_deg 13.029 r_dihedral_angle_1_deg 5.4 r_scangle_it 1.067 r_angle_refined_deg 1.039 r_mcangle_it 0.809 r_scbond_it 0.602 r_mcbond_it 0.437 r_chiral_restr 0.071 r_bond_refined_d 0.006 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7015 Nucleic Acid Atoms Solvent Atoms 451 Heterogen Atoms 80
Software Software Software Name Purpose ADSC data collection AMoRE phasing REFMAC refinement HKL-2000 data reduction SCALA data scaling