☰ Navigation Tabs
Crystal structure of enolase PC1_0802 (TARGET EFI-502240) from Pectobacterium carotovorum subsp. carotovorum PC1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3V4B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 294 0.17M SODIUM ACETATE, PH 8.5, 0.085M TRIS-HCL, 25.5% PEG4000, 15% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
Crystal Properties Matthews coefficient Solvent content 2.2 44.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 204.278 α = 90 b = 86.338 β = 123.07 c = 114.463 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2012-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 70 99.2 0.077 8.8 3.1 113519 -5 37.06
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 100 1 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3V4B 2 50 108370 3334 99.2 0.19 0.188 0.1916 0.245 0.2449 RANDOM 38.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.11 0.5 -0.96 0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.291 r_dihedral_angle_4_deg 15.374 r_dihedral_angle_3_deg 14.759 r_scangle_it 9.15 r_scbond_it 7.789 r_mcangle_it 5.645 r_dihedral_angle_1_deg 5.525 r_mcbond_it 4.4 r_mcbond_other 1.574 r_angle_refined_deg 1.034
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.291 r_dihedral_angle_4_deg 15.374 r_dihedral_angle_3_deg 14.759 r_scangle_it 9.15 r_scbond_it 7.789 r_mcangle_it 5.645 r_dihedral_angle_1_deg 5.525 r_mcbond_it 4.4 r_mcbond_other 1.574 r_angle_refined_deg 1.034 r_angle_other_deg 0.685 r_chiral_restr 0.061 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12295 Nucleic Acid Atoms Solvent Atoms 730 Heterogen Atoms 90
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling