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Re-refinement of PDB entry 2EQA - SUA5 protein from Sulfolobus tokodaii with bound threonylcarbamoyladenylate
Crystallization Crystal Properties Matthews coefficient Solvent content 2.23 44.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.391 α = 90 b = 120.843 β = 90 c = 67.552 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 34.87 29361 29361 3249 99.66 0.18634 0.18634 0.18297 0.1827 0.21698 0.216 RANDOM 17.877
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.05 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.082 r_dihedral_angle_3_deg 13.435 r_dihedral_angle_4_deg 12.952 r_dihedral_angle_1_deg 6.613 r_scangle_it 5.668 r_scbond_it 3.563 r_angle_refined_deg 2.277 r_mcangle_it 2.211 r_mcbond_it 1.302 r_chiral_restr 0.158
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.082 r_dihedral_angle_3_deg 13.435 r_dihedral_angle_4_deg 12.952 r_dihedral_angle_1_deg 6.613 r_scangle_it 5.668 r_scbond_it 3.563 r_angle_refined_deg 2.277 r_mcangle_it 2.211 r_mcbond_it 1.302 r_chiral_restr 0.158 r_bond_refined_d 0.027 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2564 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms 34
Software Software Software Name Purpose BSS data collection SOLVE phasing REFMAC refinement