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Crystal Structure of the Cu-adduct of Human H-Ferritin variant 4His-delta C-star
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CEI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 298 50 mM Tris, 5 mM calcium chloride, 200 microM cupric chloride , pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.99 58.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 179.268 α = 90 b = 179.268 β = 90 c = 179.268 γ = 90
Symmetry Space Group F 4 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2012-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.98 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 103.5 100 0.06 32.2 15.2 21660 21660 3 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.95 100 0.215 0.215 3.2 15.2 3115
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2CEI 1.85 51.78 21641 21639 1573 99.98 0.1709 0.1709 0.1688 0.1699 0.1968 0.1984 RANDOM 17.5534
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.803 r_dihedral_angle_4_deg 17.995 r_dihedral_angle_3_deg 11.114 r_dihedral_angle_1_deg 4.429 r_scangle_it 1.762 r_scbond_it 1.076 r_angle_refined_deg 0.842 r_mcangle_it 0.587 r_mcbond_it 0.356 r_nbtor_refined 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.803 r_dihedral_angle_4_deg 17.995 r_dihedral_angle_3_deg 11.114 r_dihedral_angle_1_deg 4.429 r_scangle_it 1.762 r_scbond_it 1.076 r_angle_refined_deg 0.842 r_mcangle_it 0.587 r_mcbond_it 0.356 r_nbtor_refined 0.29 r_symmetry_vdw_refined 0.185 r_nbd_refined 0.175 r_symmetry_hbond_refined 0.09 r_metal_ion_refined 0.082 r_xyhbond_nbd_refined 0.081 r_chiral_restr 0.069 r_symmetry_metal_ion_refined 0.045 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1416 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms 7
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection